xclone 0.3.0

Inference of Clonal Copy Number Variation in Single Cells

XClone is an algorithm to infer allele- and haplotype-specific copy numbers in individual cells from low-coverage and sparse single-cell RNA sequencing data (e.g., those generated by 10x Genomics, Smart-seq, etc.). The full description of the algorithm and its application on published cancer datasets are described in

[full-text](link here)

The demo of XClone and results on the 3 processed cancer datasets are available at [xclone-data](https://github.com/Rongtingting/xclone-data)

Please frequently read Development and keep software up to date since XClone is being updated and improved frequently at this stage.

pip install -U xcltk

pip install -U git+https://github.com/hxj5/xcltk

conda create -n xclone python=3.7
conda activate xclone

pip install git+https://github.com/single-cell-genetics/XClone